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The NR database directory contains the following files
* <code>nr</code> - original FASTA database downloaded from [ftp://ftp.ncbi.nih.gov/blast/db/FASTA/nr.gz here]* BLAST-formatted files <code>nr.XX.pXX</code> (protein sequences) downloaded from [ftp://ftp.ncbi.nih.gov/blast/db here]
* <code>nr_raps2</code> - RAPSearch-reformatted database with the following command <code>prerapsearch -d nr -n nr_raps2</code>