4,816
edits
Changes
→Biology and Genetics
|- bgcolor="#f5faff"
| [[BEAST]] || 1.8.2 || beast || <code>beast</code>
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| BWA || 0.7.12 || bwa || <code>bwa</code>
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| [[BIMr]] || 1.0 || bimr || <code>BIMr</code>
|-bgcolor="#f5faff"
| Diamond || 0.7.8 || diamong || <code>diamond</code>
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| [[BioPerl]] || 1.6 || perl || <code>perl</code>
|- bgcolor="#f5faff"
| [[Cufflinks]] || 2.1.1 || cufflinks || <code>cufflinks, cuffmerge,</code>...
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| HMMER || 3.1b1 || hmmer || <code>hmmscan, hmmsearch,</code>...
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| HumANN || 0.99 || humann || various commands
|-bgcolor="#f5faff"
| [[IM]] || 12172009 || im || <code>IM, IMa</code>
| [[LAMARC]] || 2.1.6 || lamarc || <code>lamarc, lam_conv</code>
|-bgcolor="#f5faff"
| [[RAPSearch]] MEGAN || 25.19 7.1 || megan5 || <code>MEGAN</code>|-bgcolor="#f5faff"| rapsearch MetaPhlAn || 1.7.8 || metaphlan || <code>rapsearchmetaphlan.py</code>
|-bgcolor="#f5faff"
| [[Migrate]] || 3.6.11 || migrate || <code>migrate-n</code>
|-bgcolor="#f5faff"
| [[PLINK]] || 1.07 || plink || <code>plink</code>
|-bgcolor="#f5faff"
| [[RAPSearch]] || 2.19 || rapsearch || <code>rapsearch</code>
|-bgcolor="#f5faff"
| [[SAMtools]] || 0.1.18 || samtools || <code>samtools</code>
|-bgcolor="#f5faff"
| [[Structure]] || 2.2.3 || structure || <code>structure.exe</code>
|-bgcolor="#f5faff"
| QIIME || 1.2.19 || with [[Python]] 2.7.2 || <code>swarm</code>
|}