Available Software
 Legacy documentation
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- See also: Software, Modules, Programming Tools
Contents
- This page lists application software available.
- Software listed below is available at all sites unless indicated otherwise.
- Multiple versions of the same piece of software may be available. The default version is not necessarily the most recent one. We advise you to use Modules to discover which versions are available.
Astronomy and Astrophysics
| Software | Default/ Latest version | Modulefile | Command(s) |
|---|---|---|---|
| DS9 | 6.0 | ds9 | ds9
|
| IRAF | 2.14.1 | -- | -- |
| Starlab | 4.4.4 | starlab | various commands |
| SExtractor | 2.19.5 | sextractor | sex, ldactoasc
|
Atomic and Molecular Science
| Software | Default/ Latest version | Modulefile | Command(s) |
|---|---|---|---|
| ABINIT | 6.12.3/ 8.4.2 | abinit | abinit
|
| aenet | 1.0.0/ 1.0.0 | aenet | generate.x, train.x, predict.x
|
| AmberTools | 13 | ambertools | various commands |
| CPMD | 3.13.2/ 3.15.3 | cpmd | cpmd.x, cpmd2cube.x, trimcube.x
|
| DFTB+ | 1.2.2 | dftb+ | dftb+
|
| DL_POLY | 3.10 | dl_poly | DLPOLY.Y
|
| DL_MESO | 2.2 | ||
| ESPResSo | 3.1.2/ 3.3.0 | espressomd | Espresso
|
| GAMESS(US) | 12jan2009/ 1may2013 | gamess | rungms
|
| GAMESSPLUS | v2010-2 | gamessplus | rungmsplus
|
| Gaussian (Placentia) | g09.D01 | gaussian | g09
|
| GROMACS | 4.5.5/ 2018.1 | gromacs | grompp, mdrun, mdrun_mpi,...
|
| JuNoLo | 1.02 | junolo | vdw.exe
|
| LAMMPS | 29Jul11/ 1Jul13 | lammps | lammps
|
| Molden | 5.0 | molden | molden
|
| NAMD | 2.9 | namd | namd2
|
| NWChem with NBO5 | 6.1.1/ 6.6 | nwchem | nwchem
|
| Open Babel | 2.3.1 | openbabel | babel
|
| Qbox | 1.56.2 | qbox | qb
|
| Quantum ESPRESSO | 5.0.2+/ 5.1.1 | espresso | pw.x, cp.x,...
|
| Q-Chem | 3.2.0.2 | ||
| SIESTA | 3.2/ 4.0 | siesta | siesta
|
| VASP | 5.2.12/ 5.4.4 | vasp | vasp, vasp.gamma, vasp.noncollinear
|
| VMD | 1.9 | vmd | vmd
|
| XPLOR-NIH | 2.23 | xplor-nih | xplor
|
| YAeHMOP | 3.0 | yaehmop | viewkel, bind,...
|
| WebMO (Placentia) | 9.0.009e |
Biology and Genetics
| Software | Default/ Latest version | Modulefile | Command(s) |
|---|---|---|---|
| ABySS | 1.3.2 | abyss | abyss-pe, ABYSS
|
| BEAST | 1.8.2 | beast | beast
|
| BWA | 0.7.15 | bwa | bwa
|
| BIMr | 1.0 | bimr | BIMr
|
| Diamond | 0.7.8 | diamong | diamond
|
| BioPerl | 1.6 | perl | perl
|
| BLAST | 2.6.0+ | blast | blastn, makeblastdb
|
| Bowtie | 2.3.2 | bowtie | bowtie2, bowtie2-build
|
| Cufflinks | 2.1.1 | cufflinks | cufflinks, cuffmerge,...
|
| HMMER | 3.1b1 | hmmer | hmmscan, hmmsearch,...
|
| HumANN | 0.99 | humann | various commands |
| IM | 12172009 | im | IM, IMa
|
| IQ-TREE | 1.5.5 | iqtree | iqtree, iqtree-omp
|
| InterProScan | 5.11-51.0 | interproscan | interproscan.sh
|
| LAMARC | 2.1.6 | lamarc | lamarc, lam_conv
|
| MEGAN | 5.7.1 | megan5 | MEGAN
|
| MetaPhlAn | 1.7.8/ 2.0 | metaphlan | metaphlan.py
|
| Migrate | 3.6.11 | migrate | migrate-n
|
| MIRA | 3.9.18/ 4.0.2 | mira | mira
|
| MrBayes | 3.2.1 | mrbayes | mb
|
| PhyML | 2.4.4 | phyml | phyml_linux
|
| PLINK | 1.07 | plink | plink
|
| RAPSearch | 2.24 | rapsearch | rapsearch
|
| SAMtools | 0.1.18/ 1.4.1 | samtools | samtools
|
| Structure | 2.2.3 | structure | structure.exe
|
| Trinity | 2.2.0 | trinity | Trinity
|
| QIIME | 1.2.19 | with Python 2.7.2 | swarm
|
Earth, Ocean and Atmospheric Science
| Software | Default/ Latest version | Modulefile | Command(s) |
|---|---|---|---|
| CDO | 1.6.1/ 1.9.0 | cdo | cdo, ncdump
|
| Elmer FEM | r5675 | elmerfem | ElmerSolver, ElmerSolver_mpi
|
| Ferret | 6.84/ 6.93 | ferret | ferret
|
| GDAL | 1.10.1 | gdal | gdalinfo
|
| GEOS | 3.3.3/ 3.10.2 | geos | geos-config / geosop
|
| GMT | 4.5.7/ 6.1.1 | gmt | GMT
|
| ISSM | r11321 | issm | issm.exe
|
| NCO | 4.3.4/ 4.6.8 | nco | ncap2, ncbo, ncks...
|
| PROJ | 4.8.0/ 8.2.1 | proj | proj
|
| wgrib2 | 2.0.1 | wgrib2 | wgrib2
|
Engineering
| Software | Default/ Latest version | Modulefile | Command(s) |
|---|---|---|---|
| ANSYS (Placentia) | 14.5 | ||
| Delft3D | 62441 | delft3d | d_hydro, wave and others
|
| Elmer FEM | r5675 | elmerfem | ElmerSolver, ElmerSolver_mpi
|
| EnergyPlus | 8.1/ 8.5.0 | energyplus | runenergyplus
|
| LS-DYNA (Glooscap) | 7.0.0 | lsdyna | lsdyna_mpp_d and others
|
| OpenFOAM and OpenFOAM+ | 2.2.1/ 3.0/ 1616 | openfoam | blockMesh, icoFoam and others
|
| SU2 | 5.0.0/6.0.1 | su2 | SU2_CFD and others
|
Mathematics, Statistics and Computer Science
| Software | Default/ Latest version | Modulefile | Command(s) |
|---|---|---|---|
| DiVinE | 2.5.2 | divine | divine
|
| GAP | 4.4.10 | gap | gap.sh
|
| Gurobi (Placentia and Glooscap) |
7.5.1 | gurobi | gurobi.sh, gurobi_cl
|
| Macaulay2 | 1.1 | macaulay2 | M2
|
| MATLAB (Placentia and Fundy) |
various | -- | |
| MPI-Spin | 1.1 | mpi-spin | ms, mscc
|
| R | 3.1.2/ 3.5.2 | r | R
|
| Sage | 4.8 | sage | sage
|
| Spin | 5.1.6 | spin | spin, xspin
|
Graphics & Visualization
| Software | Default/ Latest version | Modulefile | Command(s) |
|---|---|---|---|
| ImageMagick | 6.7.4-0 | imagemagick | convert, mogrify, animate,...
|
| FFmpeg | 0.9 | ffmpeg | ffmpeg
|
| FSL | 5.0.9 | fsl | flirt, melodic,...
|
| Ghostscript | 9.06 | ghostscript | gs
|
| ParaView | 4.1.0/ 4.3.1 | paraview | paraview
|
| PGPLOT | 5.2.2 | pgplot | pgplot
|
| Gnuplot | 4.6.0 | gnuplot | gnuplot
|
| HDFView | 2.8 | hdfview | hdfview
|
| JasPer | 1.900.1 | jasper | jasper, imgcmp, imginfo,...
|
| Ncview | 2.1.1 | ncview | ncview, ncdump
|
| Grace | 5.1.22/ 5.1.24 | grace | xmgrace
|
| feh | 1.3.4 | feh | feh
|
| NCL/NCARG | 6.1.2/ 6.2.1 | ncl | ncl, ncargex
|
| VTK | 5.8.0 | vtk | vtk
|
Editors
| Software | Default/ Latest version | Modulefile | Command(s) |
|---|---|---|---|
| Emacs | 24.3 | emacs | emacs
|
| XEmacs | 21.4.22 | xemacs | xemacs
|
| nano | 2.2.6 | nano | nano
|
| Vim | 7.3 | vim | vim, vi
|
File Transfer and Compression
| Software | Default/ Latest version | Modulefile | Command(s) |
|---|---|---|---|
| GridFTP | 4.2.1 | ||
| bzip2 | 1.0.6 | compression | bzip2, bunzip2
|
| Gzip | 1.6 | compression | gzip, gunzip
|
| GNU Tar | 1.28 | compression | tar
|
| XZ Utils | 5.2.0 | compression | xz
|
| Zip | 3.0 | compression | zip, zipcloak, zipnote,...
|
| UnZip | 6.0 | compression | unzip, unzipsfx, funzip
|
| zlib | 1.1.13 | compression | --
|
| PBZIP2 | 1.2.8 | compression | pbzip2
|
| pigz | 2.3.4 | compression | pigz
|
| PXZ | 4.999 | compression | pxz
|