- Description
- RAPSearch stands for Reduced Alphabet based Protein similarity Search.
- Modulefile
rapsearch- Databases
- Current, only the NR database is available at ACENET, and its location is stored in the environment variable
NCBIDB. See examples below on how to access the database formatted for RAPSearch.
- Documentation
- RAPSearch2 homepage
- Usage
- Here is an example of a submission script:
#$ -cwd
#$ -l h_rt=01:00:00
#$ -pe openmp 4
#$ -l h_vmem=2G
module load rapsearch
rapsearch -q 4440037.3.dna.fa -d $NCBIDB/nr_raps2 -o output.txt -z $NSLOTS