- Description
- Lamarc is a program for doing Likelihood Analysis with Metropolis Algorithm using Random Coalescence. Lamarc estimates effective population sizes, population exponential growth rates, a recombination rate, and past migration rates for one to n populations assuming a migration matrix model with asymmetric migration rates and different subpopulation sizes. This version can use DNA or RNA sequence data, SNPs, microsatellites, or electrophoretic data. The program can produce: estimates of recombination rate, migration rates between each population pair, population sizes (assuming constant mutation rates among loci), population exponential growth rates, profile likelihood tables, and percentiles.
- Modulefile
lamarc- Documentation
- LAMARC homepage
- Usage
$ module load lamarc
$ lamarc